FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences579016
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19000.3281429183304088No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15860.27391298340633075No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12970.22400071846028435No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7990.13799273249789298No Hit
ATGACCAGCCTGCAGCTGCCGTCCTCCCCGA6620.11433190101827928No Hit
ATGAACCCAAACGATCTGGCAGATGAACTGG6230.10759633585254985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)