FastQCFastQC Report
Sun 21 May 2023
EGAF00007938392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528292
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG89051.6856208309041214No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27410.5188418526118131No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14050.26595140566202025No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13250.2508082651261045No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11540.21843980223058462No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8180.15483861197973847No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7240.13704542185003749No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6270.11868436395023965No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5340.10108046307723759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)