FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501632
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25520.508739474355703No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15570.31038689716764484No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13350.26613134728247No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12440.2479905588160245No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8700.17343391171217148No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7310.14572435570298545No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7210.1437308624649145No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6950.13854778004593007No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6830.13615558816024498No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6490.12937771115080376No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6490.12937771115080376No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6040.12040699157948456No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5980.119210895636642No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5190.1034622990558816No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5160.10286425108446032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)