FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444975
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63711.4317658295409854No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10220.2296758244845216No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6760.15191864711500647No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6000.1348390359008933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)