FastQCFastQC Report
Wed 31 May 2023
EGAF00007938403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520364
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15640.3005588395815237No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11390.21888524186915315No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9930.19082795889031526No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9180.17641497105872042No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8730.16776717835976354No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8000.1537385368703446No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5580.10723262946706535No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5520.10607959044053779No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5360.10300481970313088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)