FastQCFastQC Report
Wed 31 May 2023
EGAF00007938404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520364
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27250.5236718912146113No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15570.29921362738390817No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15330.29460147127779784No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10640.20447225403755834No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10110.194287075969898No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9510.18275668570462214No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9270.17814452959851182No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9190.17660714422980836No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5910.11357434411296707No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5820.1118447855731757No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5710.10973088069120847No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5430.1043500319007464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)