FastQCFastQC Report
Wed 31 May 2023
EGAF00007938405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488933
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14840.3035180689378708No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10510.21495787766421987No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9410.1924599075947011No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8620.17630227454477404No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7630.15605410148220716No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7380.15094092646640747No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5180.10594498632737No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5000.10226350031599422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)