FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488933
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG76601.5666768248410314No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14270.2918600299018475No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14230.29104192189931954No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10190.20841301364399623No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9410.1924599075947011No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8560.1750751125409821No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8510.17405247753782216No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7910.16178085749990284No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5250.10737667533179393No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5190.106149513328002No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5100.1043087703223141No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4920.1006272843109383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)