FastQCFastQC Report
Wed 31 May 2023
EGAF00007938407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530918
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16250.3060736309561929No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11320.21321560014917557No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10540.19852406586327834No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9200.17328476337212148No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8500.16010005311554704No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7760.14616193084431117No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5930.11169333117355222No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5900.11112827216255618No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5680.10698450608191848No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5310.10001544494630055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)