FastQCFastQC Report
Wed 31 May 2023
EGAF00007938408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530918
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17890.33696352355731013No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15980.3009880998572284No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15500.29194715568129165No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11280.2124621881345142No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10700.2015377139219239No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9430.17761688245642454No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9160.17253135135746012No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8750.16480887820718076No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6510.12261780538614249No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6240.11753227428717805No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5950.11207003718088293No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5530.10415921102693824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)