FastQCFastQC Report
Sun 21 May 2023
EGAF00007938410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463883
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG74601.6081641275925178No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9610.20716430651694498No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8730.18819400581612172No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5930.12783395813168408No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5580.12028895217112935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)