FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494426
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT19430.39298095164898283No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16250.32866394566628776No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13610.2752686954165032No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12070.24412146610412883No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10690.21621031256446868No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10070.2036705189452011No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9070.18344504536573725No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6890.13935351296250603No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG6820.13793772981194355No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6120.12377989830631884No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5920.11973480359042607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)