FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494426
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27000.5460877866455243No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26130.5284916246313908No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT20880.42230788833920546No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16050.324618850950395No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14500.293269366902226No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9580.1937600368912638No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9300.18809690428901393No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6570.13288136141707757No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6380.12903852143697944No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6230.12600470040005987No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5990.12115058674098854No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4990.10092511316152468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)