FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376945
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53771.4264680523683828No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9000.23876162304845533No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8980.23823104166390321No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5200.13795115998355198No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4390.116462613909191No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA3910.10372866067994005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)