FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461656
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28140.6095447692654271No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7530.16310846171175072No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7480.1620254041970645No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6130.13278285130053546No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5470.11848649210667683No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4970.10765591695981423No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)