FastQCFastQC Report
Wed 31 May 2023
EGAF00007938428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486184
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47290.9726770111727248No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27710.5699488259588962No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16450.3383492669442022No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG11060.22748589011567635No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8760.18017869777697335No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG8560.1760650288779557No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7370.1515886989288006No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7210.14829776380958648No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6860.1410988432363056No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6660.13698517433728793No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6540.13451697299787735No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6310.12978625376400704No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6140.12628963519984204No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6070.12484985108518587No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5990.12320438352557879No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5830.11991344840636467No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5830.11991344840636467No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5180.10654402448455728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)