FastQCFastQC Report
Sun 21 May 2023
EGAF00007938431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451845
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18720.4143013644059356No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12010.265799112527526No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9350.2069293673715544No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA9170.2029457004061127No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT8940.1978554592836039No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8670.19187995883544134No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7050.15602695614646617No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT6580.1456251590700351No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5720.12659208356848034No Hit
GGACGCAGAACGACCGGTCACGACGCTAGAGCGGTGTTTAGCGC5260.11641160132346269No Hit
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGAAAC5120.11331319368367472No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5100.11287056402084784No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4990.11043610087530017No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4890.10822295256116589No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT4870.10778032289833904No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4810.10645243390985848No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4760.10534585975279134No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)