FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451845
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64401.425267514302471No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18630.4123095309232148No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12990.2874879660060419No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11140.24654472219455786No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10360.22928216534431056No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9880.21865905343646605No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC9450.2091425156856887No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG9110.20161781141763216No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7150.1582401044606004No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6610.14628910356427535No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC6430.14230543659883366No Hit
CTGGGTGAGGCAGAATCCTTCACCATGGCCA5380.11906737930042381No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5380.11906737930042381No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5300.1172968606491164No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG5240.11596897166063584No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5100.11287056402084784No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5000.11065741570671359No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4980.11021478604388672No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4950.10955084154964645No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4850.10733769323551218No Hit

[OK]Adapter Content

Adapter graph