FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439377
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57991.319823295256693No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15950.3630139948153863No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13470.3065704395086679No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8030.18275876980360828No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6390.14543319290723No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5700.12972913921302207No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4640.10560407121902149No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4430.10082457661643644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)