FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429083
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25700.598951717965988No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13540.31555666386223646No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8610.2006604782757648No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8310.193668823980442No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7950.18527883882605461No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7790.1815499565352158No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5760.13423976247019806No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5680.13237532132477867No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4970.11582840615918133No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4730.11023508272292307No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4530.10557397985937454No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4490.10464175928666482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)