FastQCFastQC Report
Wed 31 May 2023
EGAF00007938440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443960
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63691.4345887016848364No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27570.621001892062348No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12830.2889899990990179No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11100.2500225245517614No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6580.14821155059014324No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6560.14776105955491484No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6200.13965222092080368No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6200.13965222092080368No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5840.1315433822866925No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5220.11757816019461213No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4990.11239751328948554No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4640.10451392017298856No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4580.10316244706730336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)