FastQCFastQC Report
Sun 21 May 2023
EGAF00007938442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422219
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59961.420116100886033No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13640.3230550969994245No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11520.2728441874951151No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8860.20984370670197222No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8380.19847519888967574No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7700.18236981282225576No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6130.14518531851953606No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6020.14258003547921813No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4930.11676404898879492No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)