FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471602
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69041.4639462936968037No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32050.679598474985263No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17710.3755285176907647No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17660.3744683016611465No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16250.34457020962591334No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16180.3430859071844479No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13310.2822295070843635No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13270.28138133426066897No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11830.25084711260766496No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11650.24703033490103946No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11070.23473182895746839No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10010.21225524912956265No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9890.20971073065847895No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9550.20250126165707524No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9250.19613996547936607No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8490.18002468182916953No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8180.1734513424455367No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7880.16709004626782753No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6930.14694594170508182No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5570.11810806569946693No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4970.10538547334404857No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4950.1049613869322013No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4850.10284095487296491No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)