FastQCFastQC Report
Sun 21 May 2023
EGAF00007938447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences365189
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19550.5353392353000774No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16520.45236849959883785No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11350.31079797036602963No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9340.2557579773760984No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG6360.17415639572933467No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5700.15608356221025277No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4130.11309212489970946No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC3880.10624635462732997No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT3800.10405570814016853No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG3790.10378187732927333No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG3780.10350804651837815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)