FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences365189
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51871.4203604161133003No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39661.0860129960102851No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11830.32394184928899833No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9140.25028136115819477No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA6630.18154982762350455No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5970.16347699410442262No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5060.13855839031296122No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4960.13582008220400943No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4180.11446127895418537No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG3980.10898466273628175No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA3950.1081631703035962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)