FastQCFastQC Report
Sun 21 May 2023
EGAF00007938449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430271
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16440.38208477912757305No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC14020.3258411559226627No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11670.27122441438070427No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8540.19847956288013835No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8110.1884858612362906No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6680.15525099297884357No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6630.15408893464816362No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5850.13596082468955611No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5820.13526358969114813No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5770.13410153136046818No Hit
ATAACGCAGGTAAGAGTACACTTCGCGTTCTTCTTCGGTATAAC5510.12805882804093233No Hit
GCCATCGCACTGCGGGTCACCCAGCAGGGCATCAATCAGGGTGC5390.1252698880473004No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5140.11945959639390058No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT5030.11690306806640466No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4800.1115575997452768No Hit
TACATCGTACGGGTAACAGTTGGAATAGGCTTTGCTACGTTCAA4690.10900107141778088No Hit
ACCGCTAGAAGCAACCAGGCTACGCAGGGAGGCATAGTCCGGCA4670.1085362480855089No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT4360.1013314864352931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)