FastQCFastQC Report
Sun 21 May 2023
EGAF00007938450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430271
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63931.4858077816074056No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16520.383944072456661No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG14140.3286300959162946No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12450.28935252433931175No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10480.24356742611052104No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10450.24287019111211305No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9370.21776973116942577No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8690.20196573787217825No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8160.18964791956697058No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6760.1571102863079315No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6210.14432764467045187No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5860.1361932363556921No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5770.13410153136046818No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG5480.12736159304252437No Hit
ATCGTGAAAACCATCACCAACGACCAGATTG5230.12155130138912452No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA5090.11829753806322063No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5070.11783271473094863No Hit
AACTGCACCCTGATCGACGCACTGCTGGGCG4830.11225483474368479No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4800.1115575997452768No Hit
GGTCGTATTTGCGATTCTCCGCACCGCATCC4640.10783901308710092No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC4590.10667695475642094No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4370.1015638981014291No Hit

[OK]Adapter Content

Adapter graph