FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430087
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60071.3966941572286538No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17520.4073594412293327No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11490.2671552499843055No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11100.25808731721721423No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10180.23669629633074235No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9680.22507074150113815No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9320.21670034202382307No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9150.21274765338175766No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7100.16508287858038026No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7050.16392032309741983No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5990.13927414685865883No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5640.13113625847793586No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5150.1197432147449237No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4680.10881519320509571No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4450.10346743798347775No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4360.10137483811414899No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4360.10137483811414899No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)