FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419516
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59811.4256905576902907No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42321.0087815482603761No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15140.36089207563001174No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13380.3189389677628505No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9920.23646297161490862No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG9660.2302653534072598No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9400.22406773519961098No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8180.19498660360987424No Hit
CTGAGCGATGTAAACGTGACTAACGGCAACG8130.19379475395455717No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7970.1899808350575425No Hit
GGTCAGAAAGGTGGCGCGCAGAAGTCCCAGA7450.17758559864224488No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG7320.17448678953842048No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6470.15422534539803012No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6280.1496963167078252No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6260.14921957684569837No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6060.14445217822443007No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6050.14421380829336664No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5960.1420684789137959No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5820.13873129987890806No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5740.13682434043040076No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5710.1361092306372105No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5680.13539412084402025No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5240.12490584387722994No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4640.110603648013425No Hit
CTGCGTTTCAAAACCGGCCGTAACGCTGCGT4530.10798157877172743No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4330.1032141801504591No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4260.1015455906330152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)