FastQCFastQC Report
Sun 21 May 2023
EGAF00007938459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467956
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20750.44341775722503823No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20230.43230560138132645No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17710.37845438460026154No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16140.3449042217644394No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11410.24382634264759934No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9490.20279684414774038No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9080.194035336655583No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8360.17864927471813588No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7640.16326321278068878No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7570.16176734564788142No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7050.15065518980416961No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6950.14851823675730197No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6870.14680867431980785No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6340.13548282317140928No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6290.13441434664797544No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5140.10983938660899743No Hit
CAGACGGCCACGCAGGGAGTCACCTTCCTGCAGAGACACTTCGG5050.10791612886681655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)