FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467956
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64751.3836770978468063No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25190.5382984725059621No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20780.4440588431390985No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18960.40516629768610724No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17920.3829419859986836No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17210.3677696193659233No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15870.3391344485378967No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12210.26092196702254056No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10240.2188239919992478No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9710.20749814085084922No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7740.16540016582755643No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7440.15898930668695346No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7410.15834822077289318No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6920.14787715084324166No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6780.14488541657762696No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6310.134841737257349No Hit
GTAGCGAGCGGTAACAACGGTCGCGGCTACA5280.11283112087461214No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5230.11176264435117832No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4980.10642026173400917No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4820.10300113685902093No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4770.1019326603355871No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)