FastQCFastQC Report
Wed 31 May 2023
EGAF00007938466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434198
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20880.48088660012252477No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7480.1722716364423604No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6760.15568933988641126No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6140.14141014007434397No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5930.13657363691219213No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4820.11100926305510389No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)