FastQCFastQC Report
Wed 31 May 2023
EGAF00007938468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445525
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41890.9402390438247011No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31510.7072554851018461No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20980.4709051119465799No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19070.4280343415072106No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18220.40895572639021377No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12400.2783233264126592No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11700.2626115257280736No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7710.1730542618259357No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7580.17013635598451265No Hit
GGTCGTGGCATCACCGGTGTTATGATCCCAG6870.154200101004433No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6440.14454856629818755No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6070.13624375736490657No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6010.1348970315919421No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5630.12636776836316704No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5570.12502104259020258No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5460.1225520453397677No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5220.11716514224790976No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5130.11514505358846305No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5110.11469614499747488No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5100.11447169070198081No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4700.10549351888221761No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4480.10055552438134785No Hit

[OK]Adapter Content

Adapter graph