FastQCFastQC Report
Sun 21 May 2023
EGAF00007938470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460239
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20200.43890239636362843No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5680.12341413917551533No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5300.11515755944194211No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5040.10950832067686571No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4630.1005999057011683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)