FastQCFastQC Report
Sun 21 May 2023
EGAF00007938472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449713
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA10360.23036914654457397No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8640.1921225314811891No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7460.16588357463537856No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6640.1476497232679509No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6470.14386953456982565No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5190.11540693731335319No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)