FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526091
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16250.3088819234695138No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8640.1642301426939446No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8290.15757730126537045No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7100.13495764040821834No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6350.12070155163270233No Hit
GCATTTAGACGGAATGGACGCTGCGTTACCAGCGTTCAGACCTT5880.11176773600004562No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5530.10511489457147147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)