FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495018
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23500.47473021183068087No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8410.16989281197855433No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8240.16645859342488556No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8130.1642364520078058No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7620.15393379634679952No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7500.15150964207362158No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7480.15110561636142522No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6290.12706608648574397No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6290.12706608648574397No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5830.1177734951052285No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5820.11757148224913033No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5750.1161573922564432No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5470.11050103228569468No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5420.10949096800520386No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5110.10322856946616081No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4990.10080441519298287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)