FastQCFastQC Report
Wed 31 May 2023
EGAF00007938488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471696
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23520.4986262338455276No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16070.34068552627115767No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8110.17193277025881076No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7060.14967267053356398No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6190.1312285879040738No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6020.12762457175808148No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5180.10981649197788405No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5050.10706047963094875No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)