FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452252
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13020.28789259085642516No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11740.25958978622537876No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9450.20895429981514732No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7810.1726913313816191No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7620.16849013381919814No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7550.1669423241909378No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7150.15809769774373578No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6300.13930286654343155No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6210.13731282559281108No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5430.12006580402076719No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4940.10923113662294473No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4810.10635663302760408No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4780.10569328604406393No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG4540.10038651017574272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)