FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452252
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21450.4742930932312074No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14460.3197332460663524No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13840.3060240750731893No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10480.23172921291669243No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8320.18396823010180166No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8040.17777699158876026No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7560.16716343985211785No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7370.1629622422896969No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6850.15146422790833428No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6720.14858972431299364No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6380.14107179183287194No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5970.13200604972448987No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5450.12050803534312729No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5110.11299010286300558No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5040.11144229323474523No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5000.11055783059002502No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT4610.10193431980400308No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)