FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489794
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23090.471422679738829No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17470.356680563665541No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC16800.3430013434219284No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC14170.2893052997790908No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC10920.22295087322425347No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9490.19375492554012502No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8610.17578818850373829No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8560.17476735117212544No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8530.1741548487731577No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7750.15822978639999674No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7250.14802141308386793No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7140.14577557095431956No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6760.13801720723406166No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6660.1359755325708359No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6420.13107551337909407No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6260.12780883391793285No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5810.1186212979334169No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5750.11739629313548144No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5700.11637545580386857No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5450.11127126914580415No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5270.10759625475199779No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5150.10514624515612686No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5070.10351290542554624No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4930.10065456089703019No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4920.10045039343070761No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)