FastQCFastQC Report
Sun 21 May 2023
EGAF00007938500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424782
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48911.151414137133871No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46291.0897354407672641No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22510.5299188760352369No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19260.453409042756049No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17740.41762598226855185No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12600.29662273825162083No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11460.269785442885998No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11180.2631938264804064No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6320.14878219886906696No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6070.1428968270783602No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5670.13348023221322936No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5620.13230315785508803No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5460.1285365199090357No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5150.12123865888855931No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5100.12006158453041797No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5020.1181782655573918No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5000.11770743581413524No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4930.11605953171273736No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4670.10993874505040233No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4520.10640752197597828No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4430.10428878813132382No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4370.10287629890155421No Hit

[OK]Adapter Content

Adapter graph