FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470112
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG17490.3720390034715132No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG16810.3575743652576407No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14980.31864747124089576No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11670.24823871758219315No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11030.23462494043972498No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10650.2265417602613845No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10540.22420189231502277No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10070.21420427472602274No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7970.16953406847729904No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7190.15294227758491594No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7090.15081512490640528No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5050.10742121026478797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)