FastQCFastQC Report
Sun 21 May 2023
EGAF00007938502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470112
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23650.5030716084677694No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17600.37437887141787485No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG16730.35587264311483224No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16250.34566231025798105No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12410.263979647403172No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11700.24887686338574636No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10910.2320723572255122No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10880.23143421142195905No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10320.21952215642229936No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8910.18952930365529916No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7510.15974916615615No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6860.1459226737458308No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5750.12231127901436253No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5700.1212477026751072No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4820.10252875910421347No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4740.10082703696140494No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)