FastQCFastQC Report
Wed 31 May 2023
EGAF00007938514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495330
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41340.8345951184059113No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14300.28869642460581835No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12570.2537702137968627No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10770.21743080370661985No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9800.1978478993802112No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8460.17079522742414147No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7200.14535764036097146No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6890.1390991864009852No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6860.13849352956614783No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6420.12961056265519957No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6200.12516907919972545No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6110.1233521086952133No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6100.12315022308360082No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5260.10619183170815416No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5000.10094280580623019No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)