FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542646
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24410.4498328560424291No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21520.39657529955071996No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18240.33613073716566605No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12480.22998418858703462No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12470.22979990638464118No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6660.12273194679404253No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6310.11628206971027151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)