FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542495
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25660.4729997511497802No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15050.27742191172268865No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14960.27576291025723737No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7750.14285845952497256No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7460.1375127881362962No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6380.11760477055088064No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5960.10986276371210794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)