FastQCFastQC Report
Sun 21 May 2023
EGAF00007938523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488006
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT9280.19016159637381508No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8640.17704700352044853No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8300.17007987606709754No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8200.168030720933759No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC6650.13626881636701188No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6440.13196559058700097No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6110.12520337864698386No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT5930.1215148994069745No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5830.11946574427363597No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5690.11659692708696205No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5250.10758064450027253No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5240.10737572898693867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)