FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488006
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41880.858186169842174No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14480.29671766330741833No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10330.21167772527386958No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9840.20163686512051082No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9650.1977434703671676No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9570.1961041462604968No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7980.16352257964041425No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA6440.13196559058700097No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6330.1297115199403286No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6320.12950660442699474No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5760.118031335680299No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5480.11229370130695114No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5160.10573640488026785No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4980.10204792564025852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)