FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517455
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12080.23345025171270933No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9070.17528094230416172No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8370.16175319593008086No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8260.1596274072141539No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7730.1493849706737784No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7720.14919171715414867No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7530.1455199002811839No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7250.14010880173155155No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6950.13431119614265977No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6280.1213632103274681No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5970.11537235121894657No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5910.11421283010116823No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5330.1030041259626441No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)